| File name | Type | Description | Remark |
|---|
| createPriors.R | R script | Samples parameter values from respective prior distributions and stores the values in files that later serve as input files to the ABC simulations. | Launched by driver_p1_simul.sh; paths and arguments may need to be adjusted. |
| collectSumStats.R | R script | Collects summary statistics generated in multiple simulations by SPoCS, omitting those which are not needed. | Launched by driver_p1_simul.sh; paths and arguments may need to be adjusted. |
| rm_duplicates.sh | bash script | Removes duplicate lines with same run ID from prior files<.strong>. Such lines exist because SPoCS is relaunched whenever the simulation fails. The last line from those lines with the same run ID is taken. | Launched by driver_p1_sst.sh; paths and arguments may need to be adjusted. |
| obtainCloseSimulations.R | R script | Determines which simulations are close to the putative truth. | Launched by driver_p1_sst.sh; paths and arguments may need to be adjusted. |
| chooseSstPLS.R | R script | Chooses summary statistics globally via partial least squares (PLS) regression. | Launched by driver_p1_sstchoice_global.sh; paths and arguments may need to be adjusted. |
| chooseSstLGB.R | R script | Chooses summary statistics globally via boosting with the logistic loss (LogitBoosting). | Launched by driver_p1_sstchoice_global.sh; paths and arguments may need to be adjusted. |
| chooseSstL1B.R | R script | Chooses summary statistics globally via boosting with the L1-loss. | Launched by driver_p1_sstchoice_global.sh; paths and arguments may need to be adjusted. |
| chooseSstL2B.R | R script | Chooses summary statistics globally via boosting with the L2-loss. | Launched by driver_p1_sstchoice_global.sh; paths and arguments may need to be adjusted. |
| chooseSstPLS_local.R | R script | Chooses summary statistics locally via partial least squares (PLS) regression. | Launched by driver_p1_sstchoice_pls_local.sh; paths and arguments may need to be adjusted. |
| chooseSstLGB_local.R | R script | Chooses summary statistics locally via boosting with the logistic loss (LogitBoosting). | Launched by driver_p1_sstchoice_lgb_local.sh; paths and arguments may need to be adjusted. |
| chooseSstL1B_local.R | R script | Chooses summary statistics locally via boosting with the L1-loss. | Launched by driver_p1_sstchoice_l1b_local.sh; paths and arguments may need to be adjusted. |
| chooseSstL2B_local.R | R script | Chooses summary statistics locally via boosting with the L2-loss. | Launched by driver_p1_sstchoice_l2b_local.sh; paths and arguments may need to be adjusted. |
| abcAllSst.R | R script | Performs ABC with all summary statistics. | Launched by driver_p1_abc_allsst.sh; paths and arguments may need to be adjusted. |
| abcLocal[v1].R | R script | Performs ABC with summary statistics chosen locally by the method denoted by v1. v1 is one of 'PLS', 'LGB', 'L1B' or 'L2B'. | Launched by driver_p1_abc_[v1]_local.sh; paths and arguments may need to be adjusted. |
| abcGlobal[v1].R | R script | Performs ABC with summary statistics chosen globally by the method denoted by v1. v1 is one of 'PLS', 'LGB', 'L1B' or 'L2B'. | Launched by driver_p1_abc_[v1]_global.sh; paths and arguments may need to be adjusted. |